Download MZmine 2

MZmine 2 beta (version 1.90) can be downloaded here.

Please keep in mind that MZmine 2 is under heavy development and beta version is not recommended for real data analysis. Also, file formats may change during development and there is no guarantee that projects created using current beta version will be readable by the final version.

System requirements

Installation instructions

After downloading the software package, unpack it to a new folder. MZmine 2 can be started by running one of the following startup scripts:

startMZmine.bat (on Windows)
startMZmine.command (on Mac OS X)
startMZmine.sh (on UNIX-based systems)

The startup scripts can be edited and tuned to your needs. You may set a path to a particular Java Virtual Machine (JVM) or adjust its parameters. For example, if you are running a 64-bit system with a plenty of memory, you may add the java -d64 option and increase the JVM heap size by adjusting the -Xms and -Xmx parameters. Detailed description of java options can be found on Sun website.

Source code

Please see the development page.

Old version (MZmine 1)

The last version of original MZmine 1 series is 0.60. This version is already old and unsupported, but it can be still downloaded from here.